Ive seen it done both ways, obviously in aero works because theres enough moisture in the air of your root zone itll sprout roots so you can leave it suspended without rockwool, I use foam plugs like Bigz spoke about. Anyway if the netpot looks like its squeezing the tip of your clone then I wouldnt recommend putting it through the hole it might slow the root growth initially but it will in fact root eventually. Larger cuts will be a little more riskier to start root this way because the time it takes to develop roots it needs to sustain all of that plant matter you'll see a lot of leaves dying off. Just think ahead like are you going to need to take it out of that net pot for whatever reason? If none of those issues are stopping you then go for it, aero is an ez and quick way to clone as long as the basic factors are covered